Genetics & Molecular

2022

First complete human genome sequence (T2T-CHM13)

In 2022 the Telomere-to-Telomere Consortium published a gapless 3.055 billion base pair human genome, filling the 8 percent the reference genome had left unfinished. It added nearly 200 million base pairs and 1,956 predicted genes.

Adam Phillippy, one of the leaders of the complete genome sequence, at the National Human Genome Research Institute
NHGRI, Ernesto del Aguila III, Public domain (Wikimedia Commons)

Key people

Sergey Nurk
First author of the 2022 complete human genome paper
Karen H. Miga
Senior author of the 2022 T2T-CHM13 paper
Adam M. Phillippy
Senior author of the 2022 T2T-CHM13 paper

Source

Nurk S, Koren S, Rhie A, et al. The complete sequence of a human genome. Science. 2022;376(6588):44-53. (opens in a new tab)

Since its first release in 2000, the human reference genome had covered only the euchromatic part of the genome and had left important heterochromatic regions unfinished. By the National Human Genome Research Institute's account, the Human Genome Project had mapped about 92 percent of the genome. The missing 8 percent contained numerous genes and much repetitive DNA, and it was comparable in size to an entire chromosome.

The Telomere-to-Telomere (T2T) Consortium set out to sequence the rest, working from a human cell line that carries only one copy of each chromosome, unlike most human cells, which carry two. On 31 March 2022 the consortium published six papers in Science. The main paper, whose joint first authors were Sergey Nurk, Sergey Koren, Arang Rhie and Mikko Rautiainen and whose author list ended with Karen Miga and Adam Phillippy, presented T2T-CHM13. It was a complete sequence of 3.055 billion base pairs, with gapless assemblies of every chromosome except Y, and it corrected errors in the earlier references.

The new sequence added nearly 200 million base pairs containing 1,956 gene predictions, 99 of them predicted to code for proteins. The completed regions included all of the centromeric satellite arrays, recent segmental duplications and the short arms of all five acrocentric chromosomes. The authors wrote that the work made these complex regions available for studies of genetic variation and function.

According to NHGRI, the consortium also found more than 2 million additional variants in the human genome and produced more accurate information about variants in 622 medically relevant genes.

Keep exploring

All 526 moments in the history of medicine. This one is in chapter 7, Genes and pandemics